Tooth decay is still skyrocketing among children—even those with healthy diets and good brushing habits. Here we look at the surprising early-life and hidden factors that may be fueling this crisis long before a child’s first tooth appears.
This article was adapted from the work of our colleagues at ANH International. Read the original here.
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THE TOPLINE
- Tooth decay in children is rising sharply—even among those with good diets and hygiene—due to hidden early-life factors like maternal nutrition, birth method, antibiotic exposure, and disruptions to the developing oral microbiome.
- The FDA-approved mass fluoridation of public water, long hailed as a dental health success, is now under serious scrutinyfor its links to fluorosis, developmental toxicity, and other health risks—leading several states to reconsider or restrict its use.
- True prevention must begin before birth and include whole-body, nutrition-based strategies that support microbial balance, jaw development, and immune function—moving beyond simplistic messages about brushing and sugar.
The Rising Crisis of Childhood Tooth Decay
Early childhood caries (ECC)—commonly known as tooth decay—are the most common chronic disease among children globally. Amazingly, tooth decay is five times more common than asthma and seven times more common than hay fever in children. Recent data shows that nearly 46% of children in the US have tooth decay. Despite being largely preventable, childhood tooth decay continues to surge.
Traditionally, tooth decay has been blamed on high-sugar diets, starchy foods and poor oral hygiene. But an increasing number of children with healthy diets and good brushing habits are still developing severe decay—some requiring surgery. This troubling trend suggests we may be missing deeper, less visible causes.
Might the true roots of dental disease begin even before birth? Emerging research points to factors like maternal nutrition, toxin exposure during pregnancy, birth interventions, and the early-life microbiome as key contributors to a child’s oral health. These findings also raise new concerns about overexposure and underexposure to fluoride. To truly understand and prevent dental disease in children, we must widen our focus from the mouth itself to the earliest stages of life.
How ECC Begins Before the First Tooth
ECC refers to the presence of one or more decayed, missing, or filled tooth surfaces in any primary tooth in children 71 months (about 6 years) or younger, as defined by the American Academy of Pediatric Dentistry. It’s also commonly known as baby bottle tooth decay, nursing bottle caries, or milk bottle syndrome. Regardless of the name, the mechanism is the same: bacteria—primarily Streptococcus mutans—feed on sugars from food and drinks, producing acid that lowers the mouth’s pH, eroding enamel, and weakening the tooth. Over time, this leads to cavities and even tooth loss.
However, a child’s risk of developing ECC starts long before the first tooth appears. Studies (here and here) show that mothers can transmit cariogenic bacteria to their infants—especially between 6 and 30 months of age—through everyday actions like kissing, sharing utensils, or pre-chewing food. In this way, maternal oral health directly shapes the baby’s oral microbiome. Even during pregnancy, a mother’s diet and gut health can affect tooth and jaw development in the womb. Nutrients like vitamins A, D, and K2 help form strong enamel and jaw structures, while calcium supports tooth mineralization. On the other hand, antibiotics, antidepressants, and poor maternal gut health can impair nutrient absorption and disturb microbial balance—effects that may then be passed on to the child.
Beyond The Womb: The Many Roots of Childhood Tooth Decay
While a mother’s gut health and diet lay the foundation, what happens during and after birth is just as important for a baby’s oral health. The mode of delivery, ie. whether it’s a vaginal birth or a caesarean section (C-section), can shape or disrupt the development of a baby’s oral microbiome. Research (here and here) has demonstrated that babies born vaginally are exposed to more beneficial bacteria from the maternal vaginal canal, helping seed a healthier oral, nasal, and skin microbiome, as well as the gut. This process, known as vertical transmission, is largely bypassed in C-section births, which leaves infants more vulnerable to imbalanced microbial development throughout their bodies.
Similarly, antibiotics, while sometimes necessary, wipe out both harmful and beneficial bacteria, disrupting the microbiome’s natural balance. Just one course of antibiotics will alter the gut microbiome for years, irreversibly for some species. Early exposure to antibiotics in infancy significantly affects the diversity and number of bacteria colonizing the baby’s mouth and gut.
Beyond these early-life influences, several ongoing factors also shape a child’s oral health and immunity. Feeding practices, such as breastfeeding versus bottle-feeding, the type and timing of weaning foods, and frequent consumption of sugar and refined starches can all feed harmful bacteria and wear down enamel. Reduced saliva flow due to certain medications or health conditions, can limit the mouth’s natural protection. Poor oral hygiene, especially when brushing is delayed, sporadic, irregular, or unsupervised further increases the risk of decay.
In recent years, the rapid rise of plastic food pouches that children suck on has alarmed healthcare authorities and dentists, as many of them come with extremely high sugar contents. Regular consumption of these pouches has been linked to an increased risk of dental decay in young children. We also need to mention the rapid introduction of a range of non-nutritive sweeteners to eliminate sugar in people’s diets, which is now raising questions about the effects not only on the gut microbiome, but the oral microbiome as well. Together, these factors create an environment where dental disease can take root early and progress quickly in children.
Hidden In Plain Sight: Other Clear Drivers of Dental Caries
In 1945, community water fluoridation was introduced as a strategy to reduce dental caries. This involved adding controlled amounts of hydrofluorosilicic acid, the ‘fluoride’ used to mass medicate public water supplies, based on research suggesting that fluoride strengthens tooth enamel and helps prevent decay. Over the following decades, the benefits were documented (here, here, and here), with studies reporting a 50–70% reduction in tooth decay among populations with fluoridated water.
However, in recent years the apparent public health victory of water fluoridation has come under scrutiny. Later studies (here and here) reveal that alongside the decline in dental caries came a rise in dental fluorosis—white streaks, spots, or enamel discoloration caused by excessive fluoride during tooth development. Even more concerning, high levels of fluoride exposure have been linked to skeletal fluorosis (painful joint and bone damage), calcification of soft tissues, increased fracture risk, and impaired bone development. A major meta-analysis also found that children exposed to high fluoride levels had lower IQ scores compared to those in low-fluoride areas, raising red flags about its impact on brain development.
This isn’t entirely surprising. Fluoride is a naturally occurring mineral found in water, soil, and certain foods. While it can help protect teeth at low levels, too much of it disrupts calcium signaling, mitochondrial function, and the normal development of tooth enamel, making it porous or mottled. In a natural diet, we would only ever be exposed to minute quantities, very different to when the public is exposed to the indiscriminate mass medication of the water supply. The more water you consume, the higher your dose regardless of age or body size.
What we’re also not often told is that the ‘fluoride’ that’s regularly added to water supplies is actually a highly toxic by-product of the phosphate fertilizer industry, called hydrofluorosilicic or hexofluorosilic acid due to its low cost and ease of disposing of so much by-product. Sodium fluorosilicate and sodium fluoride may also be used. These forms differ significantly in origin and composition from naturally occurring fluoride compounds (calcium fluoride), however, both release fluoride ions in water.
A systematic review published in the Lancet in 2014 officially labelled industrial fluoride as a neurotoxin. Many states are now stopping water fluoridation as evidence mounts against its supposed efficacy and safety.
Alarmingly, fluoride exposure today goes beyond tap water. It’s included in toothpastes, mouth rinses, dietary supplements, as well as fluoridated foods and beverages. Consider how much exposure a tiny infant has if on infant formula reconstituted with fluoridated water? Babies are at particular risk of overexposure at a time of critical development and growth.
MAHA’s Impact
For the reasons discussed above, Health Secretary Robert F. Kennedy, Jr. and EPA Administrator Lee Zeldin have both begun processes to reassess water fluoridation recommendations. Riding the MAHA (‘Make America Healthy Again’) wave, Utah became the first state to ban supplemental fluoride, and Florida passed legislation to restrict its use. Nebraska, Louisiana, Kentucky, Massachusetts, and New Hampshire have all introduced bills to ban fluoride in drinking water.
Because the policy is linked with RFK Jr., any effort to limit or ban water fluoridation will probably be met with hostility by the mainstream, dismissing it as a fringe idea. But the science on fluoride’s dangers was compelling enough to convince a federal court that water fluoridation represents an unreasonable risk to public health, especially for children.
Toward True Prevention: Rethinking Childhood Dental Health
Clearly, focusing on sugar reduction and regular brushing to prevent childhood dental disease is too narrow. The mouth is a living ecosystem made up of bacteria, fungi, viruses and other microorganisms. Its health depends not just on cleaning, but on how this complex system interacts with the rest of the body and the foods and liquids that go through it. True oral health begins well before a child picks up a toothbrush. It starts with a healthy mother, a balanced maternal gut microbiome, and mindful early-life oral care.
To ensure lifelong oral health for our children, we must work from the inside out. This includes feeding them a nutrient-dense, minimally or unprocessed diet rich in calcium, phosphorus, magnesium, fat-soluble vitamins and essential microminerals (which will contain naturally occurring fluoride). It means avoiding constant snacking, nurturing the oral microbiome with fermented foods and probiotics, and promoting the development of strong jaws through chewing whole and textured foods.
Policymakers and health professionals have a role to play too. Systemic changes like educating mothers about prenatal nutrition, facilitating access to dental care, regulating fluoride exposure, and banning harmful products like caffeinated energy drinks for children is essential. By tackling these often-overlooked factors, we can raise a generation of children whose oral health isn’t in need of saving or just barely maintaining, but truly strong, whole, and healthy.
Actions You Can Take to Improve Dental Health Naturally
- Optimize your diet. Eat a diet low in refined sugars and carbohydrates and high in nutrient dense foods as recommended by the ANH-Intl Food4Health guidelines
- Brush your teeth morning and night for the recommended 2 minutes using an electric toothbrush if possible (regulates pressure, protects enamel and gums), or a natural alternative where you don’t exert excessive pressure. If you choose to use a toothpaste containing fluoride, ensure you rinse your mouth very well and do not swallow. It’s critical that children are taught to do the same and never swallow their toothpaste
- Incorporate daily flossing or use of interdental brushes (if you can find natural ones)
- Reduce your levels of stress due to its impact on the immune system and knock on effects on oral health
- Try oil pulling, which has been long used in Ayurvedic medicine to improve oral health
- Take 5g Vitamin C in divided doses through the day to support your immune health and reduce the risk of developing gum disease
